The story revolves around Haruka Nanase, a boy who has always loved to be immersed in water, and to swim in it. Before graduating from elementary school, he participated in a swimming tournament along with his fellow swimming club members, Makoto Tachibana, Nagisa Hazuki, and Rin Matsuoka. After achieving victory, each of the boys went their separate ways. Time passed, and in the middle of their uneventful high school lives Rin appears and challenges Haruka to a match, showing Haruka his overwhelming power. Not wanting it to end like this, Haruka, gathers together Makoto and Nagisa once again and brings a new member named Rei Ryugazaki to create the Iwatobi High School Swimming Club in order to defeat Rin.

2041, Earth. After being pulled into the planet's atmosphere, the fall of the Freeport Space Station has led to the "Great Cataclysm"—an event that devastated the Earth's environment. Left as a polluted wasteland, survivors go to war with their fellows to guarantee themselves resources; in the end, these scrimmages have erased the whole existence of humanity. Coincidentally, life still exists on a moon base. Although it is supposedly meant as an immigration outpost for the mission to explore Mars, it is soon turned into a city, both regulating and allowing its citizens to flourish. The lunar base, officially named "The City of Eden," holds the hope of fully colonizing the moon. Takeru, one of many citizens of Eden in the year 2267, participates in "Tube Races" between gangs and groups using hovercraft-like vehicles. Due to causing an accident in one of his races, Takeru is sentenced to complete volunteer work outside the city. While clearing his punishment, Takeru stumbles upon remains that may unravel the truth about Earth and Eden's genesis.

2041, Earth. After being pulled into the planet's atmosphere, the fall of the Freeport Space Station has led to the "Great Cataclysm"—an event that devastated the Earth's environment. Left as a polluted wasteland, survivors go to war with their fellows to guarantee themselves resources; in the end, these scrimmages have erased the whole existence of humanity. Coincidentally, life still exists on a moon base. Although it is supposedly meant as an immigration outpost for the mission to explore Mars, it is soon turned into a city, both regulating and allowing its citizens to flourish. The lunar base, officially named "The City of Eden," holds the hope of fully colonizing the moon. Takeru, one of many citizens of Eden in the year 2267, participates in "Tube Races" between gangs and groups using hovercraft-like vehicles. Due to causing an accident in one of his races, Takeru is sentenced to complete volunteer work outside the city. While clearing his punishment, Takeru stumbles upon remains that may unravel the truth about Earth and Eden's genesis.

Set in a slightly futuristic world where Earth has been invaded and is at war with aliens from another dimension called the Nova, the story follows the adventures of a Japanese boy named Kazuya Aoi who enrolls for training at a special school for genetically modified girls called Pandoras who battle the aliens, and their male partners, called Limiters, who use a special power called "freezing" to limit their opponent's mobility. The protagonist makes the acquaintance of an unusual older girl named Satellizer el Bridget who appears to be the most powerful Pandora in her class, but has not yet chosen a male partner to be her Limiter, and in spite of the warnings of all his friends, he decides to be her Limiter.

Decades into the future, humanity is under siege by an alien race known as the Novas. These inhuman beings leave devastation in their wake whenever they appear, with the efforts to stave them off becoming known as Nova Clashes. Young women known as "Pandoras" and young men known as "Limiters" are implanted with stigmata to give them superhuman powers and are trained in military academies, where they must learn to work together if humanity is to have a chance of surviving. Freezing tells the story of Kazuya Aoi as he sets out for his first day at the West Genetics military academy, right when a battle royale is being undertaken by the Pandoras. It is here that he mistakes Satellizer el Bridget—a powerful Pandora known as the "Untouchable Queen"—as his deceased sister and embraces her. Though he costs her the match, she finds that his touch doesn't drive her away and decides to take him as her Limiter. The only question is whether or not their partnership can survive the machinations of their upperclassmen and the impending battle with the Novas…

These episodes focus on ecchi and comedy and don't have anything to do with the main story of Freezing.

These episodes focus on ecchi and comedy and don't have anything to do with the main story of Freezing.

Second season of Freezing. Ever since the 10th NOVA clash, the Chevalier had concluded that the NOVA have been appearing at a steadier rate and they are losing more Pandoras than they can produce. Their solution is the E-Pandora Project which involves normal humans being given the power to become Pandoras. Inviting Pandora from around the world to their Alaskan base witness the unveiling of their new project, Satellizer, Kazuya and Rana are among those who have been summoned. However, as time goes the E-Pandora Project starts to become fishier and the Pandoras start to grow more and more concerned...

Second season of Freezing. Ever since the 10th NOVA clash, the Chevalier had concluded that the NOVA have been appearing at a steadier rate and they are losing more Pandoras than they can produce. Their solution is the E-Pandora Project which involves normal humans being given the power to become Pandoras. Inviting Pandora from around the world to their Alaskan base witness the unveiling of their new project, Satellizer, Kazuya and Rana are among those who have been summoned. However, as time goes the E-Pandora Project starts to become fishier and the Pandoras start to grow more and more concerned...

Short specials included on the BD/DVD volumes of Freezing Vibration.

Short specials included on the BD/DVD volumes of Freezing Vibration.

After resolving the problems in the Labyrinth Kingdom, Love Momozono and her friends live a happy life and continue their dance training. Suddenly, the town children's toys start to go missing and the girls agree to help find them. Love Momozono's stuffed rabbit then comes to life and tells the Cures that the Toymajin is responsible. The Fresh Pretty Cure cast then travel to the Kingdom of Toys to save the day!